NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257171_1007497

Scaffold Ga0257171_1007497


Overview

Basic Information
Taxon OID3300026377 Open in IMG/M
Scaffold IDGa0257171_1007497 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1749
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000440Metagenome / Metatranscriptome1137Y
F001138Metagenome / Metatranscriptome767Y
F011502Metagenome / Metatranscriptome290Y

Sequences

Protein IDFamilyRBSSequence
Ga0257171_10074971F011502N/AATADMEEVNKVIAEYEAKTGAQPFDMATGERLERVTREQNEVLMVHPIAGG
Ga0257171_10074972F001138GGCGGMSPQNLSMIAFLALIVWRFVFAGLRCRPWVRAIAPQQQRHHNVLEEALHISDPGGVAVIAGNRFENSSDDLDPLDPKDRAKRYLGRIVALTGATRMDDAYVLDVGKMRFRVGYRYVRRLRDMTDPECAYEETCFYPVHKGMPKAEEIATALLQLTNNPALFDKWAVQNGLAFKPDGQVFTRAQ
Ga0257171_10074973F000440AGGVRSDRLAIRKRTKCAPAQRAAKYLKRVAALTGAEQVRGDSYWLRAGRRHFLVDSKFVRVISSRGESTCFSVAADPDMPGAEAVASALLQLKNNPRLFEKWRELQGYTFKANGKMFRNEH
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