Scaffold Ga0257171_1012290

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0257171_1012290

Scaffold Ga0257171_1012290

Overview

Basic Information
Taxon OID	3300026377 Open in IMG/M
Scaffold ID	Ga0257171_1012290 Open in IMG/M
Source Dataset Name	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1410
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.23	Long. (^o)	-122.22	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022063	Metagenome / Metatranscriptome	216	Y
F072053	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257171_10122902	F072053	N/A	MKPFRTKRPAIVIAALLLSVFMASAAMPQSPPKAKNVWKPVPFAIVHFNEDAPKSWNLYFSSKRGVLLLRLWKRYLLIDRNTQQVFDIDPDKIVAKGDDVEFSAEDNAGQPADITDWRERDVGYLRRLRFRFGEKGSYLDIQTPLKANGTPLY
Ga0257171_10122903	F022063	AGG	MNVTVRFLKRALQMFRRVFPQCNMISQAIAFNLFLAFFPTLLLVVAIATSPLGSRTDMLNLITDFTRYL

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