NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257171_1079857

Scaffold Ga0257171_1079857


Overview

Basic Information
Taxon OID3300026377 Open in IMG/M
Scaffold IDGa0257171_1079857 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)576
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002588Metagenome / Metatranscriptome546Y

Sequences

Protein IDFamilyRBSSequence
Ga0257171_10798571F002588N/ARCKWASKGTGAVCGWVSLIVGATLAVLLWFYPQWFHDHISDRMNALALVLVPLLAGASVFLVRWFVSPFPIYMQIRKELDALTDAKKAERAKAVDGCFERSAAILKQHGSVLLSFHALSRAEGHRLESNEELAEVCDLIQGAGYDHPFEGISPGYVPEKDWLSFLKYVKHAPNINPEEGKDYIGAADRWRQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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