Scaffold Ga0255253_1024667

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255253_1024667

Scaffold Ga0255253_1024667

Overview

Basic Information
Taxon OID	3300026429 Open in IMG/M
Scaffold ID	Ga0255253_1024667 Open in IMG/M
Source Dataset Name	Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepC_8h (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	967
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	45.0061	Long. (^o)	-74.7949	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001055	Metagenome / Metatranscriptome	791	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255253_10246673	F001055	N/A	VESTLATYLSTQTGLTTVSFLTGDSAATQTLPKAVVLCDSARPPGSLPEGAGNYDCSVRITLFSNADDTTLADHRLRCAALVGNMRDLTSIQAAFTAGADASCYDVTIGSEDEGVDERSWATAFSFSVMVCLAP

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