NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257178_1004676

Scaffold Ga0257178_1004676


Overview

Basic Information
Taxon OID3300026446 Open in IMG/M
Scaffold IDGa0257178_1004676 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1359
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002124Metagenome / Metatranscriptome591Y
F003512Metagenome / Metatranscriptome482Y

Sequences

Protein IDFamilyRBSSequence
Ga0257178_10046763F003512GAGVESLPQFFEPLWQLTPSKLCLDTLWLMPNQSAAAHHLATPFPGPQPWEAPDPLPVMRRELKLLLIEMNVLRVEVEQLRAMKREACEREEFLSASVSRLMESRDHWRREAERLCALIAQVPPWSLFWWSCVYALKAWRKPTDRGLHCA
Ga0257178_10046764F002124GGAMADQNEAKTKTIGFLPIEKAQSLRGWDEYMDKSTELSALRTEAQKAKSAVREALKERLNENGDIDFVGEGDRIRVLRVFRKQQGRRTRSLDLSSTFREQPLEGKAETNSHDEGVCEETEASTPNLNPITEE
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