NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247578_1047318

Scaffold Ga0247578_1047318


Overview

Basic Information
Taxon OID3300026458 Open in IMG/M
Scaffold IDGa0247578_1047318 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 36R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)822
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya → unclassified Amoebophrya → Amoebophrya sp. A25(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006021Metatranscriptome383Y

Sequences

Protein IDFamilyRBSSequence
Ga0247578_10473181F006021N/APQKWAQNCFYMCTYATAAQVLISIAVTLVLSGTSVPNPKMEGDMTFKVENKALGAILSVGRYLIMFCIYVGFTCVIYSIFTIQHPKGDQYTPGISVTMQCVINLTFQFFFIYLMIFVCVTIKEFSGYEWQLLINTMENLKGTVAYCPMLAILFVGTRMRALLITNNKGAPQGWVQDGMYMATWALLVQFLFGLIVPCCTGTATPCDEDGTPQYTPAHPIALYCVLGLKWFTYIFLYGGVIAVITGVYTMTPETANGRGSVPLVGDYVGEPVGVN
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