NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255170_1034893

Scaffold Ga0255170_1034893


Overview

Basic Information
Taxon OID3300026459 Open in IMG/M
Scaffold IDGa0255170_1034893 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepA_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)917
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002188Metagenome / Metatranscriptome585Y
F101092Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0255170_10348931F101092GGAGMSKTKPNIVTPFDDKQRFKDLVLQVINDTAIYTHNVDTLSLNGELFTLTLLNKKFVFEEIKVDILSDYVDVYLMGIKKTSD
Ga0255170_10348932F002188N/AMIHELNKILKQVHEPDEYLLVPYNLAHPLYWIWKVDGVKMKDLNLNLRPFRKEHARFDIFINGQYILEKDYIAEQVDNEFHIRFIKANFGYNLAETDNIKLEGDIDTI

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