NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257177_1015924

Scaffold Ga0257177_1015924


Overview

Basic Information
Taxon OID3300026480 Open in IMG/M
Scaffold IDGa0257177_1015924 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1036
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012563Metagenome279Y
F021274Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0257177_10159241F012563N/AGFASGFLAKGFHIGYGLYFTTNRVIGIDLGSGGGGALGGTMAGFIDGQLMPTVSPEESDKVIGQLEGMKEFDFTKDQISSIQIKKPGLLGTGHITITPSNGKPVKISLRHRIAYDRIMQLTRVFSPELVSSS
Ga0257177_10159243F021274GGAGMQKSKGISGKNRPHKLIRIIEDSKIPLGEEESKLHRIKGKVEHDEPLSQEDEAFLTRLVERANEWQKGLTNSSDTEPDDTMSG
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