NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257155_1006186

Scaffold Ga0257155_1006186


Overview

Basic Information
Taxon OID3300026481 Open in IMG/M
Scaffold IDGa0257155_1006186 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1511
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005849Metagenome388Y
F011708Metagenome288Y

Sequences

Protein IDFamilyRBSSequence
Ga0257155_10061861F011708N/AMKCPACCSEIDDRSYRCRECHGLCSYRRLCWRYRYLVFGIVALIGFWTIKGYVRRWYANDYDKLPEGALVSDATTLSWLGLRDKGWFCEEPHYKGRLLHLRHKVF
Ga0257155_10061862F005849N/ATFYRDLPAFEAEAAKLDRILTHLDEDYKSITIVTHSNGGLVAMRTLLNRAKDFPSKQPHKIHRIVMFTPLTENVSLTGQPDIVKLLGKQSTDVAQMQANTSSKLVSVKEDLKALLAPQDPLAKARAEAFMKDVAEHIYIINAEGDKLVDVGPNGEKIVSDTVRMLSQLPTLGAPRLVTLRYSDIGGSEEDARERKSGVRNPAYAHSVVVKMGSQQDFSFFDHFEELLFDRIGTPPRTSAANVEQIRQSTQERIQDTIFEMNKFVVDKNPMVGLAWRDISHAVQAKFKDVPEPGRTKQVEDLTRQTYYVYIFLSLYARMDDLRSRGILSPNDEMILGWKRSWLPNLMTSELGRWMLENNLMEYYSEPMIKDLREAAGATGSSPTPPASTP
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