NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257172_1002977

Scaffold Ga0257172_1002977


Overview

Basic Information
Taxon OID3300026482 Open in IMG/M
Scaffold IDGa0257172_1002977 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2324
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001032Metagenome / Metatranscriptome800Y
F001745Metagenome / Metatranscriptome643Y

Sequences

Protein IDFamilyRBSSequence
Ga0257172_10029772F001745AGGAGGVTSPVPCSSTTKNAAYPFSQTAALKPQPPANGTSGAPSVTAVTAVTALSIEFVAKPQEAHRVEAAIPAAIADALKDVTGFAGCLVMISDQEARLVTVVTLWAGDERVNRCSQNARWVHALLKPYLDLCLRIQTMVAHLPLLPLLLAIRPETIAAGECSVMQDLLSEDKTICVA
Ga0257172_10029773F001032GGTGGMLGKRDCSVGSCGSAAITTLDHQPLCLNHFLLRCYERLEGLDPRGRKFSAEPLDLVSMRAFVEECSRKALDVSLQSENLSNLQRGRLLDILLWAGELFLLLRSPRLALAQSIASSEGQHVPRASSPSLSVSREAIS
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