NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257172_1004775

Scaffold Ga0257172_1004775


Overview

Basic Information
Taxon OID3300026482 Open in IMG/M
Scaffold IDGa0257172_1004775 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1998
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032603Metagenome / Metatranscriptome179Y
F033737Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0257172_10047752F033737AGGAGMRITMVSLSLLLPLICSPRPAAQFNPASPQAVRQDESKPVGGGLRLRQVSSTPEQALDSTLVTLKEGRASQSHLSQELAHVMMRLVESNQQPPWPVVVSFTNKLTRELIGKQPNSAQTTAMRECIVEVMRRTGRSNAGLASRLQQTLIGIGIDSSKTQLVVRDFIAVREAVQGPDDSPLVKPNPFEKPR
Ga0257172_10047754F032603AGGMLLLLASFMVVVVPSTDVSAATGNRFLGRYQSGRDDDSPCADKEKYEHSK

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