NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257172_1028914

Scaffold Ga0257172_1028914


Overview

Basic Information
Taxon OID3300026482 Open in IMG/M
Scaffold IDGa0257172_1028914 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)997
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp. 13_1_20CM_4_53_11(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009285Metagenome / Metatranscriptome320Y
F062061Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0257172_10289141F062061N/AWMEAFIQAIKQHQVLIGDHGHDLVYDLRDEEDEAQFRDLYPQGEYERARSAPRPLVDAIAQSPFAAALLEKGENWFLVTRFEDKDPDAAIYSLSSGARGQDVDMLALGRWKELLDVLAPYGITEEGGWCPVPPERKDWLSRTQQQEDAMAEQTAAAMKPHRGSLPKGAQVSMILPGSGRARGRQRRKRGGRDR
Ga0257172_10289142F009285GGAGGMREPPHFTHEEYQLTKVALAREDVPAEALALLSAWIEGERLLVDDREGVGGIDFCRMDSKIMAPLPHICASFFARRPYKRKAGHSPRWNGFYLLLYRDVEEGWKLVRIRRDFSYAQFVPVFAARIKAIEEINKRLGNEL
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