NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228620_1022845

Scaffold Ga0228620_1022845


Overview

Basic Information
Taxon OID3300026483 Open in IMG/M
Scaffold IDGa0228620_1022845 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 23D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1571
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067737Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0228620_10228452F067737N/AMEGENLKLALREVGKLIRKRLKQGAKDDEFSASGNLDKSFKYRVQDNELYIFGEQYANALSGGIKNKGKYDYDMAKKLAKWAKIKGMRPMFRLYEKDVDGSYKPTGKFRKVYESSWKSLGFVLARSIAEKGISKRFRYKGSGFIEAVKKETKEEIKKILKEGYRKDIAAQLKTLKAIK
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