NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256820_1020372

Scaffold Ga0256820_1020372


Overview

Basic Information
Taxon OID3300026486 Open in IMG/M
Scaffold IDGa0256820_1020372 Open in IMG/M
Source Dataset NameSediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PR6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)927
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Sediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.3377Long. (o)-81.4644Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047753Metagenome / Metatranscriptome149N

Sequences

Protein IDFamilyRBSSequence
Ga0256820_10203721F047753GGAGGMKKIIATLKELRVDDTWLRVAPLALAGCRKESYGKLTRLCRRKETLMAVVVAGVIGLFSAKKHIGLCKKAVKAGKNAPGDSDRELNKYLDAIWRVYILDNSIDKQRLIEKAIGCLSGKLDQELSHSLTEAKKEYKAMIQQIIGAVQADTGHSANAVHGYLATFLNSIGCTTLGGKRFTRQNISKHHLG
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