NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0257153_1046494

Scaffold Ga0257153_1046494


Overview

Basic Information
Taxon OID3300026490 Open in IMG/M
Scaffold IDGa0257153_1046494 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)891
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003512Metagenome / Metatranscriptome482Y
F009420Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0257153_10464941F009420GGAMADQNEAKTKTIGFLPIEKAQSLRGWDAYIDKSTELSVLRTEAQKAKSAVRYALKERLNENGDIDFVGEGDRIRVLRVFRKQQGRRTRSLDLSSSFRERPLEGKAGTNS
Ga0257153_10464942F003512GAGVESLPQFFQPLWQLTRSKLCLDTLWLMPNQSAAAHHLATPFPGPQPWEAPDPLPVMRRELKLLLIEMNVLRVEVEQLRAMKREARDREEFLSASVNRLMESRDHWRREAERLCALIAQVPPWSLFWWSCVDAFKAWRKPTDRGLHCA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.