NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257157_1022608

Scaffold Ga0257157_1022608


Overview

Basic Information
Taxon OID3300026496 Open in IMG/M
Scaffold IDGa0257157_1022608 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1025
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090783Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0257157_10226081F090783GGTGGVLAFSPARGVHLTHREWHGYGAKMAYFLALAGLIIGISHLLPRPRPGRLFTAGLIVITGFLATQGVLSCAISALGLVPRGPLHELLEYLTEYDDDRPVVLLVGSSFTQQGIDPEVLAEILGESGRRITVLPLAIGGLSHLERLYYLKEYLAHAKRMPQLVLFEIAGGYDNGPLFQLQQMSFSDRMVAMMDGSSAWWAFRWLFSMDGSGLPTRIVLAGKILAHLSLHVGHIGFLWNSTRAHHPSGYDPRALPPKVQHFTDDEVARFVEQAAETGDLRADWPQSVPTNWMRAFLQAEMSTLHRHGVDRFAFYSVPSMQGAN
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