NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257181_1005782

Scaffold Ga0257181_1005782


Overview

Basic Information
Taxon OID3300026499 Open in IMG/M
Scaffold IDGa0257181_1005782 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1481
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015579Metagenome / Metatranscriptome253Y
F019106Metagenome231N

Sequences

Protein IDFamilyRBSSequence
Ga0257181_10057822F019106N/AMASHVPLLTLARLLVLIGGVVLLIGGILQAIDVGGLMDFSTNLARLGSLTGIVVGILVGILALVGSREVANPAWSLILLILGLFVGSLGGILVFIGGLIGLVAHYVKI
Ga0257181_10057823F015579GGAMGSDSKKPPRPRHLFSFSGQSKQPEGSSTPRAANVTRDDILNSLTKHAHPQQGPVEEVSEIEESAQVQDLNQTAVPVRTRNRSSARGALVVFLGGFLAVWLYGYVTGAYEIPYLKGVTESPEVQVGVQLVSSNPVLFGAVSASVLLGALYLRHRKKT
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