NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255350_1047048

Scaffold Ga0255350_1047048


Overview

Basic Information
Taxon OID3300026502 Open in IMG/M
Scaffold IDGa0255350_1047048 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1039
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F004301Metagenome / Metatranscriptome444Y

Sequences

Protein IDFamilyRBSSequence
Ga0255350_10470481F004301N/AMTAMQFSLFDARSVTATVDMEPSVNARNAKRQLDTLRKQLATAQADLEDVDYNLSIVAMHQQASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVMRWIRHLIFTLNAERRDVLSAIADIEPKVAALSQIIGNAIQ
Ga0255350_10470482F003764GAGMQIQLDSPYIHDENPAALLAGAEIEAAGLHRCLKIVRLWSQSSTLSRTRREEMVEEAQRLANLYAAILFEIGSAFGLRAADELKTVIEAACILDDWECPPAEQGLLFPIPNDPTTKASPATARK
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