NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228647_1089597

Scaffold Ga0228647_1089597


Overview

Basic Information
Taxon OID3300026505 Open in IMG/M
Scaffold IDGa0228647_1089597 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 59D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)741
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009608Metagenome / Metatranscriptome315Y

Sequences

Protein IDFamilyRBSSequence
Ga0228647_10895972F009608AGAAGMKTIKTFESFINEARPQFQDTPNELAYLDFKKWAYKKRGHVKKQLENISDSSKFFIELKKIWMQWAEANAKEWSYVHSTSVAEKDFGRALASMLKRDDLIIKKTGNKLIDLK
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