Scaffold Ga0209809

Basic Information
Taxon OID	3300026509 Open in IMG/M
Scaffold ID	Ga0209809_1001210 Open in IMG/M
Source Dataset Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209809_1001210 Open in IMG/M

Source Dataset Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21440
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (61.54%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

21440

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (61.54%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F049435	Metagenome / Metatranscriptome	146	Y
F062336	Metagenome / Metatranscriptome	130	N
F066335	Metagenome / Metatranscriptome	126	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209809_100121011	F062336	GAGG	MSTTTDFSIYKATEPVLTFVRCTWINPHPTKSGTPVEHGGIIWDAAEPIECGSKPFSVTYSSGRTQEVCGGRGFVVIPIRMSNPYTIVTSSDPAMLQQVIVPQPLYMRSDYVPNEFRVSSAVTFFFVLHNDPANTLMSVQLRSHGATLLNRAYFDWVKTVAKLGNHLLRMPLDVRALPVKFGAGETVMVGRNQKSPIAAPIFRALRQYKNVEELQSDLVSPDRFKTLLAMSDDDMIKQYPAIPAIKIASTLDEAYAVLGEAFKDEQQPKALPSAAKSAKQIVEEGEGEYF
Ga0209809_100121014	F066335	GGAGG	MPQVVDNCILRTSFEFIQLARELLQTTPENMLGLQIMPDDNREHDEYVLLKPRPFAGRVNWRGLNQNARPTRTPFAYEQNACIITPGYWAEFQEIDEQMIRKVAQRGTHSARFDLTEYERELMMDISMKLHQTKESQIWQALVNGYVEERNDEGIAVWSQRYKIIRARFGISACDRQNSTPLADLACIARQVVGVSGAMFDTSAKMYANSRTWECLLRNTNPLDIGRMSLSACCDAVGMARLAQFFAARNLPQPVVYDGFWLDEQKRPNFYIPTGKIIMIGRRPDNQTIGAYFQPPVLIQCGNDTTGAHGTFVVRQDNACPDSRMPWNGRRMIRWTYGLEGIPVIKYPTSIISVDTGCDQCDCGTLVEACPN
Ga0209809_10012103	F049435	N/A	MFLCFIDLLPASKAQSEIVFYVRTGPFILPKLPLRIYLGFISDKSGPADVKNIKDLMLAKKGRIMNEEDQKLLTDPILIYDIYAVNTLEGVQLDGFFDLSFNVGRLSELQDCFNKISNDLEIIRRSLSKYAQPNPDAISIVTPMPSPNQIYQSLEQSLKPVIDSGAFKLSATIADYICDFVLHMFHKNITAIVYEIWDVNKLVVRSCDNRYFDVYNTWDDIGEEEGWEFPAFDDEH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209809_1001210

Overview

Ecosystem & Geography

Associated Families

Sequences