NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209809_1003753

Scaffold Ga0209809_1003753


Overview

Basic Information
Taxon OID3300026509 Open in IMG/M
Scaffold IDGa0209809_1003753 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9444
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F001381Metagenome / Metatranscriptome709Y
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N
F007172Metagenome / Metatranscriptome356Y

Sequences

Protein IDFamilyRBSSequence
Ga0209809_100375311F002372AGGGGGMPTRREDSLWPVVHRRASHLRALLDALDDVDVSIAYELHYYPYAIVELLRVRDDAPPLVLRSAYVQANRQWERHSEFAMRVVEAALQLVHEYRADPSLGGSDSWA
Ga0209809_100375315F007172AGGAGGMTTPTALTALQRRALAAALRAAKRDAYCRAVGGFVIVQMSDGTIDWFPAGQPPHRDGEEDRGAVILGKWRWNYRRWSRIA
Ga0209809_10037534F001381GAGMHYVVATLYVLLWLALAAGAALWLPLWALPAALVQLAVAYVMLRSWLTAAAGGDD
Ga0209809_10037535F000642GAGGVQEIGIALALCAVGAAVWYMRRREAGAGRVRGWLLLYDDVGGWRVLPASYGDAGVVADGVTYPASLPALRVGRELVWIARCDAAALIEHRALERARESAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVSALQALVAQILVLVGDK
Ga0209809_10037536F002978AGGMRDWRVTVVPWADRRLWFVQARRGRRVVWGVVYDAADPESVSLARRAVATLRSAGADCSALPASLPGAPPGAPGA
Ga0209809_10037537F004024AGGAGMHSERDYLRQPSLNDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLSIATPRLYDRIAPIIESAAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER
Ga0209809_10037539F002229N/AMGADMVTLLTFDGVEDVDYTPSDAEIRASLDDSGLYGMVLGGVTWMRLSSGAGWWTVIGGRRVTATLAAVGWCWVADGCGARGYWSPALACVPAEVRSMCGGCVEDEDEEGGDGDG
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