NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209809_1006943

Scaffold Ga0209809_1006943


Overview

Basic Information
Taxon OID3300026509 Open in IMG/M
Scaffold IDGa0209809_1006943 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5958
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005028Metagenome / Metatranscriptome414Y
F008499Metagenome / Metatranscriptome332Y
F018115Metagenome / Metatranscriptome236Y
F025895Metagenome / Metatranscriptome199Y
F032180Metagenome / Metatranscriptome180Y
F044842Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0209809_100694310F008499N/APRWKRKERDALRALQATFGRVSDPSLARLLTPTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERKDE
Ga0209809_10069434F044842AGGAGMEEIELWRGVRGNTFQSTHLVRFIGEYLGMVTVAHADEWVERCVLYRTEDGCVAVHQLRLSLLDDGVDVAEAYILPALSAGEGERGGRV
Ga0209809_10069436F025895AGGAMSDLIAWIIAGGVILALVNSNVADGLLSALDLSDNLRRAVDWARGVRGVPAGVASVCFFVLAYVFGALAYRYDLVPTWRFIQPIANDVLATGAEWLTLFALFLTLLPTLIELATVGLVQRDIKALQWMVYFFIFFDIVTDYREAVALVDVWQRGGLFAPLPDALEGAAAVLAKVGWTFAASFAFEFLTILCAVTALLLAANVRAASGGGGGR
Ga0209809_10069437F032180AGGAMWWKIEEIPHQELEDWTKAVGRFERAAKRDVAVRAAGAFVIYDLNGVLGYVAGREAPDGAYLVERWVRGKKGWTLYE
Ga0209809_10069438F005028AGGGGGMRDDDLHAAMSFFAARLRGVDVTEAGLRRWTRHKLRNDTQAVAELMLTVGYRPTYIRYFLRYHVPTLRESAAVGETYTDPDAATEAHLGLCWRLDDVVLTVVSDLHAAAKRLRQPYRDLAAVCLKWGYVHETVVQLLAKALERKAKDVVED
Ga0209809_10069439F018115AGGAGMNDTEERFVRWYAHLAEDTPLDRHAARALLRRALADREALAEYLLEHECAPSLLGEFINRHWNDALSDAARGASLRLASRTLRALDCLEERDRWAMLEWMQRGVVPSARILRRLCEGVNNAR
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