NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209809_1007256

Scaffold Ga0209809_1007256


Overview

Basic Information
Taxon OID3300026509 Open in IMG/M
Scaffold IDGa0209809_1007256 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5744
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009254Metagenome / Metatranscriptome320N
F013065Metagenome / Metatranscriptome274N
F080093Metagenome / Metatranscriptome115N
F096802Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209809_10072561F096802GGCGGMALCVRYLHRHPLELSHLPATAIVDLLALAAVEAELLADAEPL
Ga0209809_100725610F009254N/AMRLRDVEAHLRNFLARVVGVPIVSVPTELPAGSAVAGVLSLQSREAGKAVGGMRAVYQLELLASDAIPDAERRKLYEALASQIIRTELAAERDWLPMLDYQVHLEELSIERLRVRLEVEWDAD
Ga0209809_100725611F080093GGAGGMRIEKPQPRVRARTHATPMLTPTWGLHEQLYHPLVQSVLHILRELVASGGVRLVGDAPDEERELFAQLIRTRGYTSAVRHLATAHVAGVSVVEIVWDDAYMPYELRPVPPEAAHLGLDENGEIVSVRINTSAGQQDLPITHAVVVSAAPAWYVYGVRELPIRALRKYLQAYDRVLRSIDL
Ga0209809_10072563F013065N/AMARRTARDATIAIQLGGVDDGSPITWGTATQIEGKCSEISVDYRSQNVNLAGLSDAYARMRSAGAAEYTIRIRAFIPSDSFDFYASGNPPLHYRARVRIKPRSTLTTDAEYTGVITRWSWSAQAGQEQIEEIEIVGPLDV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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