NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209809_1008408

Scaffold Ga0209809_1008408


Overview

Basic Information
Taxon OID3300026509 Open in IMG/M
Scaffold IDGa0209809_1008408 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5123
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008994Metagenome / Metatranscriptome324N
F040512Metagenome / Metatranscriptome161N
F076974Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0209809_10084082F076974AGGMDHVKRRRGRPRKPATLEIDEFFAVLELLVENAKRHHMLESVLVTEGKLKVAFCVPLFGITERLLSPRRDRLAESQSPTQLRMPL
Ga0209809_10084083F040512GAGMFDLLANVTVAGLSVVSARVLEQYNWFQRLAPETKRLIAVAIAAFIALAIHMIGAIAQNAEPQSVKAAFSTALAIVIQQVYHALAKEDAQ
Ga0209809_10084085F008994GAGGMRVTRFAIDESGRALFPDYFIVDDNTRLAMAMYSANINVQNIVDEGLAETPWLSTQWLGRTVSFNEWRDAFARNGHSFPQYHAQIGERVRLSELVDINRAFVELFMSGVDLTDPLNARTHRELLTEQNVDMDDFLK
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