NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209809_1019585

Scaffold Ga0209809_1019585


Overview

Basic Information
Taxon OID3300026509 Open in IMG/M
Scaffold IDGa0209809_1019585 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2704
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028964Metagenome / Metatranscriptome190N
F052923Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0209809_10195853F028964N/AMIGAEAILALTSLRSPGTRTSALALSGSFERRAMEVAECELEIRVGPPSYDLSAYGDVLMVMLPDRREYYFVTAIERRNTYYVVRGETFARYLRDYYPDRYAGTSDAQWNGDAAEGVLRSLRPIEYVPVHSFSSSFRDYWIITPNNVPPSVNVSVSFAWASRLEAAQEITRLAHAQGFPLVWWFEPGGWYGTQPSVALVFSHGLPRNGLFRPRWAGSIKHEAWVYDRSQPTAGVALGYGHGQDRDVTRARAARGLFNGWTYWEGRLDGRATGTSTAAQAALMRWRPVEAGTGQAYSREMPRLGDQVFLAGGDSQRCAGIAHVVSERYTITGGQVSSAEVGVVQI
Ga0209809_10195854F052923N/ARTFNTLCRLRNLSGIVPYAYPTVNIGSVQDGCAVERFAFATSEPRKAFRLGDDGTAMPLFTASANSIAVRRVGNLMCVGYGTTANVWTPLTVNVNPLLNDGTTAEIVPTLGGIDFKVFSFYSKVDTEILGEVIDPQYTNINYEPKYHTGGSFTPLPGTRYEKAFLGSEDFNIDRYWFAVDRSVPSFQVGLTKYKHDWR
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