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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026509 Open in IMG/M |
| Scaffold ID | Ga0209809_1019932 Open in IMG/M |
| Source Dataset Name | Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2668 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming: Yellowstone National Park | |||||||
| Coordinates | Lat. (o) | 44.963 | Long. (o) | -110.715 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003460 | Metagenome / Metatranscriptome | 485 | Y |
| F004367 | Metagenome / Metatranscriptome | 441 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209809_10199322 | F004367 | AGGAGG | MGDETARNGRDRSDQWLEGLLTGAGASIGRVLDDRQVHAASLAIEVFAYLLAALPADRVDVRDVIRMMKYYSRGINDAKSSEG |
| Ga0209809_10199323 | F003460 | AGTAGG | MPKAARDERYFHDLQHAYEALHSVLAPRGLYAEVGMMLLVNMRRPSELRDVAIELIVRGRAIGSPVWRVAETLRVPGRMKLKSVASVLFGLMMRATYDIEASIPIPGDDRPRPPGGARP |
| Ga0209809_10199325 | F004367 | AGGAGG | MSDGTARNGRDRSDQWLEGLLTGAGASIGRVLDDRQVHAANLAIEVFAYLLAALPADQVDVRDVIRMLKHYSKGVNNAKGSEG |
| Ga0209809_10199326 | F003460 | AGGGGG | MPKAARDERYFHDLQHAYEALHSVLVPRGLYAEVGMMLLVNLRRPSELRDVAIELIVRGRAIGSPVWRVAETLKVPGRMKLRSVSSVLFGLMMRATYDIEASIPIPGDDRPRPPGGARP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |