NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209809_1023578

Scaffold Ga0209809_1023578


Overview

Basic Information
Taxon OID3300026509 Open in IMG/M
Scaffold IDGa0209809_1023578 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2345
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005028Metagenome / Metatranscriptome414Y
F025895Metagenome / Metatranscriptome199Y
F032180Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0209809_10235782F025895AGGGGGMSELISWLVAAGVIFALVNSNAADGILSALDLSDNLRRAVDWARGVRGVPAVVAAICFFIMVYVFGALAYRYDLVPTWRFIQPIANDVLSTGAEWLTLFAWFLTLLPTLIELATVGLVQRDIKTLQWMVYFFIFFDLVTDYKEAVALVETWRRSGLFAPLPDALEGAAAVMAKIGWTFAASFAFEFLTILCAVTALLLAANVRASASSGGGR
Ga0209809_10235783F032180AGGAMWWKIEEVPHQELEDWAHAVGCFERAAKRDVAVRAAGAFVICSSPDGKLGYVAGREAPDGAYVVERWVRGKRGWTLYE
Ga0209809_10235784F005028AGGAGMRDDDLHAAMRFFAERLRGAELNETRLRRWTRHKLRNDAQAVAELMLTVGYRPTYIRYFLRYHIRAVDPETDSEDAVLVVADLHAAAKRLKQPYRDLAAVCLKWGYVHETVVQLLAKMLERKV
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