NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209809_1029070

Scaffold Ga0209809_1029070


Overview

Basic Information
Taxon OID3300026509 Open in IMG/M
Scaffold IDGa0209809_1029070 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1995
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005028Metagenome / Metatranscriptome414Y
F008499Metagenome / Metatranscriptome332Y
F018115Metagenome / Metatranscriptome236Y
F032180Metagenome / Metatranscriptome180Y
F085751Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209809_10290701F085751GGTGGMSDIIAWIIAGGVILALVNSNVADGLLSALDLSDNLKRAVDWARGVRGVPAGVASACFFILAYVFGALAYRYDLVPTWRFIQPIARDVLSTGAEWLTLFALFLTLLPTLIELATVGLVQRDVR
Ga0209809_10290702F032180AGGAMWWKIESIPHQELEEWTHAVGRFERAAKRDVAVRAAGVFVIYELDGVLGYVAGREAPDGAYLVERWVRKKKGWTLYE
Ga0209809_10290704F005028GAGGMRDDDLRAASQFFAERLRDAEMDETRLLRWTRHKLRNDAQAVAELMLTVGYRPTYIRYFLRYHIPALNESATVGETYTDPDAAAEAHLGLCWRLDEDVLTVLSDLHRAAKRLRQPYRDLAAVCLRWGYVHETVVQMLAKVLERK
Ga0209809_10290705F018115AGGAGMSDEEERFVRWYAHLAADAPLDRHAARALLRRALADREALAEYLLKHECTPALLGEFINRHWNDAISDAPGSAALRLASAVMRVLGRIEDEHDRRAAGWWFQLGIVPSTRVLRQLYVRINDAR
Ga0209809_10290706F008499N/ARRKKMKSRSKSEPRWKRKERDALRALQATFGRVSDPSLARLLTSTGRVGHLTRFGIDGFVGNNPGFAVEVKARRKMLTKPTLDALLLTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERADE
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