NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209809_1032270

Scaffold Ga0209809_1032270


Overview

Basic Information
Taxon OID3300026509 Open in IMG/M
Scaffold IDGa0209809_1032270 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1839
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014738Metagenome / Metatranscriptome260Y
F016100Metagenome / Metatranscriptome249Y
F072382Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0209809_10322702F014738GGAGGMKLDVLLLISAFALAFVHPDAAQVAASAVLVLLTARIERGRQARKKKSASVAH
Ga0209809_10322703F072382AGGAGGMKTIYHTKDVWFPPFSIKIEPRRGTWFADVYVRYTEDSSLDDKYNAYIGADNFLVGTPIPAVDRRDVAKAIESLVFDCGLVGLVIYPTRVGWGASLTVCPEFETIYLHGEGATPADAIRNSTPYPPPLRNV
Ga0209809_10322705F016100AGGAGGMVKSVKVERFKEYSELMRVVSRSEKTPATNKDIIRPLNYELFIGSHLPEPDWHRLGALVVTLFRSFAVVDVEIWQTDAGIWVADAFVDFGDRRRLRRGEGETPLHAVIELITDIQRY
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