NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209809_1033487

Scaffold Ga0209809_1033487


Overview

Basic Information
Taxon OID3300026509 Open in IMG/M
Scaffold IDGa0209809_1033487 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1784
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025421Metagenome / Metatranscriptome201Y
F038570Metagenome / Metatranscriptome165N
F093039Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209809_10334872F093039GAGVTLLLHLAETWGVPPWVLERELSLFWAEAACEYEREKVRRMKREMRRYGGR
Ga0209809_10334873F025421N/AMIDLSKVRRIDRSAPGSFLEYARLQAIIAEGDLMAIARALESYGVDVQALSFNELTDVVKHIAGEPTPLGNTSATE
Ga0209809_10334874F038570AGGAGMPATHLRRIQLGQQTAFATPVAATSILRGVTDGSVTLNHNDAVVEELGRSVSDLVVVSQRHAEGEIELQTTYEDILYGLFGLFGPVAPSGGSRTFNAPITAYAAPQIYTIEYGATGAEYRVVGGIVKEWTLRYEANAGVTENWAFIGRSVQANALTGSLPTRVVTPVVSTHASWFMDNIGTAHGTTPIPGTVIEAELNINTNRHLKMFEGSQPITWGEGRWEAQLTLTAEFNATAKAWVDALLTDRVARNIRANFVESANTRELRVDFVGLIGEPVELFGDRDGNMTVELTFKALVAGPLNNWLQIRTINGIATLP
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