NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209809_1036153

Scaffold Ga0209809_1036153


Overview

Basic Information
Taxon OID3300026509 Open in IMG/M
Scaffold IDGa0209809_1036153 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1677
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006418Metagenome / Metatranscriptome373Y
F010840Metagenome / Metatranscriptome298Y
F016404Metagenome / Metatranscriptome247N

Sequences

Protein IDFamilyRBSSequence
Ga0209809_10361532F006418AGGAGMPKRRSTPAPRPAREIVIDSGDDFKIIFDRETRDYAVEYRGEPVGWRPTEAEARRLVETLRYEEAKRE
Ga0209809_10361533F010840AGGAGGVNLPFSQPLDKITYGALAAATVVILAWALREFAGIDLPAEVQSALALIIGFGISYYIPLSEVEAKAIAQTFYRK
Ga0209809_10361534F016404N/AMTVDELLTDEARAAVLRALLMIVLNESDPASARVAAARLFLSQFEEHPNAERDVLVIVDEAAFVKTV
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