NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209809_1040779

Scaffold Ga0209809_1040779


Overview

Basic Information
Taxon OID3300026509 Open in IMG/M
Scaffold IDGa0209809_1040779 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1517
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034582Metagenome / Metatranscriptome174N
F039409Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0209809_10407791F034582N/AIIPKPPEANIIYVEGATAPSKEGERLVVVLVNEDSLTEPDSLDYLGRYKLLRVQADTLSDLDAAERLAERLYDAAARHATEAQVRLPLPPVYDTALLELLSPPRRVQVLEGSNVLLDGWVKRATLSASGGSQPRAELLLHISTRYTGDPRD
Ga0209809_10407793F039409GGGGGMTPKVCLVTREFSNFNRVWTQILRNLGIDYTLCRTTGGTTTSTVQTPQGVFSPSSPDLRGYFRQFDAVILCENTGDLATTSFINYSVFWMRWNAPEDPAFLFFNPHFSAAITESGYNSNFPSDFPIVRPDPSDIAGTLYPADGGSATSVDPLIQTATRARGMCVLFLAENIRAHVQTICNTHTNR
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