NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209809_1042374

Scaffold Ga0209809_1042374


Overview

Basic Information
Taxon OID3300026509 Open in IMG/M
Scaffold IDGa0209809_1042374 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1472
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F007976Metagenome / Metatranscriptome341Y
F075805Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0209809_10423742F075805AGGAGGMWVKVWHGWRGVHNGKDISRWEWIEFDGEPIGSLVVETDEDRTDERVFYRTDDSRIVVAEHRYGDWEKGGVDYGVVSVYADLDDAARRGWRDDLVRIGAYDAPTLELDEWLSQYEEEE
Ga0209809_10423743F002982GAGGMKIAFERTPTAICAVLTEPGECDRIINVARASDAIDVFALDVSPAAYKPLDALFSLPRIVCVEIERREGGWRVEVTYWHKGLGTLAQYEEDAATLSEALARCVWALAR
Ga0209809_10423744F007976AGGAMPSTELSNFLRVALDIQATPFPGIHVADGVMAATDGVMLVAKKFDVVFMRGEGAISPKAAKVLEALAEATWIGSVAVVGNRVTATAQSTRYDEKAGGEVAGEYCEVKLPEFYCPRAPVARMLGVLTDESRDWQQIVENPNLKALKEMSARDYVALIDNPRNGGELFRPKEIDDPHWYSVAQLRKGLR
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