NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209809_1045478

Scaffold Ga0209809_1045478


Overview

Basic Information
Taxon OID3300026509 Open in IMG/M
Scaffold IDGa0209809_1045478 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1392
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002795Metagenome / Metatranscriptome529Y
F059548Metagenome / Metatranscriptome133N
F098761Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209809_10454781F098761N/AREWSSEAARSLTRDMILWGKRGVICVYTSPSFAAVDVRLRRLTQYVYVTAGRYRRGGADYAVYRWHEHPYADDALVERYRFALRLDAWYGVYDTLYGASAGDTLAILPAPAPALAPVRRR
Ga0209809_10454782F002229GGAGGMVTLLTADGVEEVDYTPSDAEIRASLDDPGLYGMVLGVVTWMRLSSGAGWWTVLFGKRLVVTLAPVGWCWVMDGLGDRGYWSSTLSAVVADVCAVYGGCVEED
Ga0209809_10454784F002795AGGAGGMATNDGLVLRGMIAAYREFVSRKDGKTYRVVTVYGDLVAGEDVLCSVDGYDVFVDSPDYSRGEMVAFPARLQFIRDASGRPAVRLYVDEGVR
Ga0209809_10454785F059548AGGAGMPTRREDALWSIVHQRSAHLRALLDGLDGVDIGVTYELDYYPYAI
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