NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209809_1049608

Scaffold Ga0209809_1049608


Overview

Basic Information
Taxon OID3300026509 Open in IMG/M
Scaffold IDGa0209809_1049608 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1297
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040649Metagenome / Metatranscriptome161Y
F069555Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0209809_10496082F040649AGGAGGMRKLNIDNPAKLFAQLRAITNASDPEEYPPLEYDIDGAYLRLTDGSPATGDWLFAIKAVELASGDIVQHAEGSGAMRKSLRLVYLDPLETYFWGEYQWRDPESFAVRARWHRIPKDYNPQLDALRKSRQGGCGDA
Ga0209809_10496083F069555AGGGGGMRKAIKDQAVKLAAAIREAANPEIEYRIGSFGLELADGSRPPADMLQRIQQLSIQSETVCQWAETSGARRDCKLVRSARDGAYYLGEYKWLDNNGLRCDVVYYQIPKYLEPKIRSLQKQAMAHGLGGEHT
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