NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209809_1052762

Scaffold Ga0209809_1052762


Overview

Basic Information
Taxon OID3300026509 Open in IMG/M
Scaffold IDGa0209809_1052762 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1234
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F069791Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0209809_10527622F002982GGAGGVKIQFERHPHAICAVLYEPGECDRIISVDRASDAFRAFGIFTRDVAPAAYKPLDALFSLPRVVCVEIERREGGWRVEVAYWNKGLGTLAQYEAEAATLSEALARCVWAPAR
Ga0209809_10527623F069791AGGAMPSSELAHFLNVALDIQAPPFSGIHVADGVILATDGVMLVTKKYNDPVYLRGRGSLSPKAAKVLAALAEATWIGSVAVVGNRVTATARSTRYEENVGEVAGEYCEVTLPEFYCPRAPVARMLGVLTDESRDWQQIVENPNLKALKEMSARDYVALIDNPRNGGELFRPKEIDD
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