NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257168_1017395

Scaffold Ga0257168_1017395


Overview

Basic Information
Taxon OID3300026514 Open in IMG/M
Scaffold IDGa0257168_1017395 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1453
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005268Metagenome / Metatranscriptome406Y
F025325Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0257168_10173951F005268N/AQQAWRALSEAGLVEIRLDEFAEKIGDVKRIVIVRLRELLDFNTGIKERESAAYSLGTLRGLELKVLANPPKPPDSSEM
Ga0257168_10173952F025325AGGAGGMLSDSPKRRKKTWEELTAAASMETDPEKLGTILEEILAALEERQRTLSLPQNAFVGNRHL

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