NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257168_1070471

Scaffold Ga0257168_1070471


Overview

Basic Information
Taxon OID3300026514 Open in IMG/M
Scaffold IDGa0257168_1070471 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)772
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003512Metagenome / Metatranscriptome482Y
F009420Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0257168_10704711F009420GGAMADQNEAKTKTIGFLPIEKAQSLRGWDEYIDKSTELSVLRTEAQKAKSAVREALKERLNENGDIDFVGEGDRIRVLRVFRKQQGR
Ga0257168_10704712F003512GAGVESLPQFFQLLWQLTPSKLCLDTLWLMPNQSAAAHHLATPFPGPQPWEAPDPLPVMRRELKLLLIEMNVLRVEVEQLRAMKREACEREEFLSASVSRLMESRDQWRREAERLHALITQVPPWSLFWWSCVDVFKAWRK
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