NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209808_1066387

Scaffold Ga0209808_1066387


Overview

Basic Information
Taxon OID3300026523 Open in IMG/M
Scaffold IDGa0209808_1066387 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1590
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021825Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0209808_10663872F021825GAGMLYFRTTWCYMYSSIADLSMKKDYQRCLDKLAATAPETKSALIRSLLPGIEAALNSGKRLKAIWEALQEEGLEMSYHSFHKTVSRSRKVKKPTAISILGKQPKPSETHDLRETEVQKIEERDPLANLKLLEENRPGFHWRAAKSLNALVHGTEDSNDKNKR
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