Scaffold Ga0209690

Basic Information
Taxon OID	3300026524 Open in IMG/M
Scaffold ID	Ga0209690_1000229 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026524 Open in IMG/M

Scaffold ID

Ga0209690_1000229 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29261
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (57.14%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

29261

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (57.14%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000186	Metagenome	1702	Y
F052516	Metagenome / Metatranscriptome	142	N
F058896	Metagenome	134	N
F093612	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209690_100022919	F052516	AGGA	MVLTKRGTVVLAFLFLGVAIIGFTLEVSVLVVLAGENSASPVGCYKYTPSTGQQRVDCIDPYRPFVILPPLLIATTAVAVAANRTATRRLAFRFSGIVLVAVGILFLTLGISGLQSSAIPCALNGCPSIFSSYYAPYWDELYAGLAMTASGIGLLLVSRTSR
Ga0209690_100022920	F000186	AGG	MEQELAIKLQEDGIRCQTHVEIPITMADFYFPLETRPLIVFVDGRVHLGTAQRAKDEELRTLLRKRGYRILELCYDGYSDKKRDRLYEEIRSGLAQLGLASTGF
Ga0209690_100022921	F093612	N/A	MLILLAGLAGPVEWKESRLRAFRNLAFGARNGFVVGVLIFISMFFVKLFLSPDGGPTISSFTLFTTLLLAFALSFFCDWIVSAFDFRLWMGDRSLEQVEIEDLFQSWEWEKTSQRWRRRGYFASSFWTLVPFFLRNKNDIHSIPPLDWRTITFLIVVVIYGLSQGLQDWTLPLLAASIVLVGYTGTSFESLKRALGPYDGTKLRELYEKRHTPME
Ga0209690_100022934	F058896	AGGA	MFLGAIFLAIAFGCWSAVHAEQWQRAKILVLVGGTFFGITGIVSLVRGITVSSDSSTWVWTGSFLIAATGCLLLMQRYGWHRRQADTPTSTMPRGARLFFGIQTGAVGIFGVMMLLVPGLAQQEFWPWKVYVSTLQTFAALFLATCLATGWATKQKDPERIKVLLPLDAVFPSLALVAVVISWSVIAVESPSPLVTSVWVGLYSFVAAGSTLLYFVLTRRSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209690_1000229

Overview

Ecosystem & Geography

Associated Families

Sequences