NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209690_1000671

Scaffold Ga0209690_1000671


Overview

Basic Information
Taxon OID3300026524 Open in IMG/M
Scaffold IDGa0209690_1000671 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18281
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (63.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008019Metagenome340Y
F010240Metagenome / Metatranscriptome306Y
F012566Metagenome / Metatranscriptome279Y

Sequences

Protein IDFamilyRBSSequence
Ga0209690_100067111F012566N/ALPSQNVGRNFESENLSTEKNRDDNTVCKQIIESDPSIRVAAFIEGAEVTGYAETARTKNVLSQSIDLRKRIGFWSSIVTEMARQTDELFGRTESVLITHKGLKMVTIPLSARRSLGLSLDRSADTEKIILKIMTKFDLGSSD
Ga0209690_100067115F008019GGALGVRKKIAVSIVLIIIVALAVWQFTSPQLLPIVGGKYSAFGPYSNRGSWTIMETMRYGSAYLAISISNVTFPRTGIGTDYSLVISDVNHTITNSIVKGFGVRVTGMSIQDSVDGSTSTWGNGHDVSDAVQSTSIFFFRTSTNHMLRFTVTFQLYDLLPLGSIPDQTVTNSFNITQIVL
Ga0209690_100067118F010240N/ALLRRLLPTTKVREHLGVYLLASLSNAFLASSQYLAVSLAVASYLPVDSGTATLIAAYGPGLGIFLAVFLNSLVFQGILAALVVILSLSAVLKTGWRWAYPFSGMMVSGFVGYWLGARFLAVLEWISTLQDNRVDSSNAYASLFWFGLASTIFYLAMILVLRKSHGNLREQIGRQG
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