NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209690_1001412

Scaffold Ga0209690_1001412


Overview

Basic Information
Taxon OID3300026524 Open in IMG/M
Scaffold IDGa0209690_1001412 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13438
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003458Metagenome485Y
F076915Metagenome / Metatranscriptome117Y
F095255Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209690_100141213F095255GAGGMATMIARPGSMRRYFASILTLTFRGVLSPFSPVSHEVVRRSAPAIVVTVEESVSLVLQDVRCIGLQPAVRRNIPVRTSTQPRRPISALQLTTGSGSVADASSVAHSLSDDGFK
Ga0209690_10014126F003458GAGMMAESRIPPGASLLLIGSGLYWILSSQLISSFTVLTPGFFQTNELGTSFITIIGIVSATVGLWIVKVDFDELRALFSRRDGWIFTVPLGLVAADVYLTLIVLSTNSQIVELNPFVSSAIAIGTAALVPFIVSYLALSQGLGLFMLRVGAYLFGSLKSYRYLPFVSICGVAAFGPASNLVLLLDPTAGLVAYLLGALGCVMLSIFLFTKVEKHDLGKPKFQRP
Ga0209690_10014129F076915N/AMASTPTSVVQKQKPTLEEEVFKLKLEWMMAKNDNEKRRISEEIRRRIGFTPSKSQ
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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