NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209690_1030303

Scaffold Ga0209690_1030303


Overview

Basic Information
Taxon OID3300026524 Open in IMG/M
Scaffold IDGa0209690_1030303 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2605
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014601Metagenome / Metatranscriptome261Y
F025249Metagenome202Y
F028763Metagenome190N

Sequences

Protein IDFamilyRBSSequence
Ga0209690_10303032F014601AGGAGGMSSSTGDNRRPSPIPRAVLAGLIAGLAAGLVSYYAINSVLGLVIGFIAGAIVGSRTVLLMHKAREHDQ
Ga0209690_10303033F028763AGGAGMSESARSKRRIALGVFAIIMGCVSLVGLSSTSYYFGLGIFGGAYGAVMIALGVVLIAKKEAVT
Ga0209690_10303034F025249GGAGMNFHGSRLNASSAENTAPSTGSYAGAPPPSVFGIIVVGLLAGLVVGLLAGPNFTLQGFFLGFAGGALITAGLYFYTSQRSRPPR
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