NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209690_1073127

Scaffold Ga0209690_1073127


Overview

Basic Information
Taxon OID3300026524 Open in IMG/M
Scaffold IDGa0209690_1073127 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1459
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048208Metagenome148N
F084048Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209690_10731271F084048N/AFDDKSVLDHVDKLRSQGLKVPIFVQVSIPSGLKNLLFVSQKFGIPVPEKVRQTLSRNPFGGGIRIAAEAYTALRTEVNGIHFSYLHRSNNPIPAYTHLLDAIETDGQLTVSIQAALRH
Ga0209690_10731272F048208AGGMKKDTFGPLVVVLVGVAAFGTVLAFSEQPTACPCNSSSSPNPWYPCIHNPCSKETLTLQSYQINAPTNLTLNIWNAGATPKALIAYYVKDSTGTQYADSNWSGPAIPPGVEISVNILIDGRAFTFQTGMSYTVTIVESTYDQFTFTIT
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