NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209059_1009176

Scaffold Ga0209059_1009176


Overview

Basic Information
Taxon OID3300026527 Open in IMG/M
Scaffold IDGa0209059_1009176 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4468
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004168Metagenome450Y
F077664Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0209059_10091765F004168AGGAGGMKGARSAQSRPYWIRYVVAFWAVEKLKWAKDNVLIACGCSLAPGLIAAGISAALSDDKWLAATYATLLTYGGLFALFLTWRLVATPWELDRERQRFIDGLTQKLAYTRLELVAIRASPPAIDVEILEIHVQAAETTHSMHAPDLPVACDIFLRLKLTLRDTRPIGVLAYELSSVLHGNSSRADFVDDIQDWGLVTEKKPIGVGTTFHYTVVRLTKLAHQLEERGVPVEGWIHFSVTGVHEREIGATIYRLIVLTPNGGITADIAGTKNLAGLAGSQFQKIPDASHVLHD
Ga0209059_10091767F077664GAGGMTKFSPDFGRTLEGKISLLLPDLAVLTALSAKISPKQSWRELYEASLLEPDRTKLPERVRAAREAIHRRLVQESETLSWEEHAEINDALRALVRRGA
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