NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209378_1000148

Scaffold Ga0209378_1000148


Overview

Basic Information
Taxon OID3300026528 Open in IMG/M
Scaffold IDGa0209378_1000148 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49074
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (78.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006236Metagenome378Y
F015708Metagenome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0209378_100014813F006236GGALKVPPGTGFLFAGSGLYWVLSGPLIGWFSVLNPTEVHLSQMGLTLILITGIASLVVGLWIIPTDLQELYKLFARNDGWIFTIPIALVVADIYLTLIGLSEGNWELNPFVASAVQIGPWAVVPFVASYIALSEGLALGMLSVGKWLFGAARSSRFMPFAITCGAASFGPLSNAVLLAFPPEDPVISFAGPVIGVVALSTGIYTHFRKFEFERLSTSLS
Ga0209378_100014825F015708AGAAGGMSHSRTVQRSVTPDSVKALMIIEAIVIAFFSFWLANEYVYNVYFRIYVNSVFIEHFKTYTIALGLGIGLASTAAAATLYKKLREAKLKLEFVAPKIRGSLEQMLASLPSMEPQAVILPISNAPVVTTQPAQAATRTVSPISPAPPPPLTEEKK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.