NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209378_1000224

Scaffold Ga0209378_1000224


Overview

Basic Information
Taxon OID3300026528 Open in IMG/M
Scaffold IDGa0209378_1000224 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41319
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010022Metagenome309Y
F023077Metagenome211N

Sequences

Protein IDFamilyRBSSequence
Ga0209378_100022421F023077N/AMNPQENVNLYTGNRLVIDSSQSSIKSVVVRGNLTAAILSNNAYPSKNFTLTTNSTQLYTVDLLLSYQAPYTSEIVISDPSSGSKTQYTSYFVSGGDLNLTIFASFQTAPSTGPSVPLGWSSFYGWVSQFGGAFPFWIKILYAVLGAQFAFVGYRWIKFEDERRRIEGHLPPLDRGNKVYLWTEVVFRTLIAGFAISLTVMIGEVLVLLIAQYLLFVNLNLISLVDFFSIFFVAALGTLVYLTREGLERIFDLKPIMED
Ga0209378_100022423F010022N/AMRKNILVAGVTLLATALLFGVSYPAGLLFSIPISILNIILGLITRAPPGLEIQPESANIRLLIDRGVVRASIYQLVFLNSKLILKRLSSVMVTVILAFVLAVVGLAFLFIVGALMGGITGFSLQEFLTQRMRNKIGSKMELTSVEKGDIEIEYDDILEVRLVKSRLYLTARNKSLSASFPRGYSRKMKPMLESIFESRFTTEESIRAAEAAEKENEKRQHPRGDRSKFPRR
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