NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209378_1001414

Scaffold Ga0209378_1001414


Overview

Basic Information
Taxon OID3300026528 Open in IMG/M
Scaffold IDGa0209378_1001414 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17145
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019293Metagenome / Metatranscriptome230Y
F052505Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0209378_10014141F019293N/AISIIEAVAAVGGASIASFLLYRFVKSRWTPAAILVTFWTTGVFVGPITNRTFIQLADLLDTSELHHDQIVALLGVLGIVGAVWAELRLRRATRLKGMVTQA
Ga0209378_10014148F052505AGGMGGRVCGGMVQAPTRAHLVGFASVLAVAVLLLLLFFPVLGRRIATRDLPTYFITVAVVPIVLWLFPPFVRALARSTYRAHRAIAGKGGLYVRVPMPRAIRFRDTVVLAIGPFAIDLFVMSEILYLFGPGDVRDFRFSLVAFPLLLVLAGLVTSLVPGAWLLDALEIRVVNPSRSEVVRAAELFEHILGPIGAVALLASFVTLLHTSGYSYEQGIFLLGIWAVRLFPPVLGAVCVYRLWVEPRVLPTLEAWCSKEAIEVRSSLPEIMNEWAKTVRAPRRP
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