Scaffold Ga0209378_1003784

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209378_1003784

Scaffold Ga0209378_1003784

Overview

Basic Information
Taxon OID	3300026528 Open in IMG/M
Scaffold ID	Ga0209378_1003784 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10122
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002499	Metagenome / Metatranscriptome	553	N
F017459	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209378_10037841	F002499	AGGAG	MRTNLISGFQLSVNYWFDLVLQGMGAPIRDWVYDFLDKKGIKRDDIPARFGDVVKILHERLGTSARVIAYRTMVELYKEFSLSANFDYEDSIEDRFVFLKERVLADRLHPTRTPSLKLAF
Ga0209378_10037842	F017459	GGAGG	MERKGNKPRPSQASSKSTSSGLAEARRLLAIVEKSQVPFGESAPIFAKIKTQIDSGKSLSVEDHEHLLRLVKIAKDWNKAEESSAMTEPDETLSG

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.