NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209378_1005882

Scaffold Ga0209378_1005882


Overview

Basic Information
Taxon OID3300026528 Open in IMG/M
Scaffold IDGa0209378_1005882 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7926
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001466Metagenome / Metatranscriptome689Y
F043307Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0209378_100588210F001466N/AMIPLRGAVLALLLPAHLASQATAPALPPPYRGFTPGIGYRAFVQQARALADNDVLRCQTSPRTAQIMECAVLIRDPRDGARFYLSAHFIESDADMVALYDSAGFGNARGVALVDRTKRDLTRVFGRPHVLGAGAWQWRYGRRVVRLSWRGRGTARWVSITLTDGAVMDRISRYAKAAASRKP
Ga0209378_10058824F043307N/AVSPTYRMPDPVTRDREAATSAVRDALAAARCAARLAGLVSDELVVRELLRDVIDQTDRAERGFARLVSTSSRDVVP
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